Purdue Libraries Purdue University Purdue Libraries

 

Electronically Searching for Biological & Agricultural Research Articles


For additional information contact Monica Kirkwood, Life Sciences Coordinator

Prepare, before going online! Develop your search strategy.
2. Performing the search in...

3. Determining whether Purdue has a subscription to the journal of interest.


1. Prepare, before going online! Develop your search strategy.

Step 1: Clearly state the topic in a sentence.
Sometimes we have a "fuzzy" idea of what we're looking for. It helps to put it into a concrete statement.

TOPIC: What research has been done on the effect of environmental stress on the membranes of tomatoes?

Step 2: Define concepts. Determine what concepts comprise the topic, and which terms may be used to express the concepts.

Your search may only require one concept, or it may require 2, 3, or more.

CONCEPTS

STRESS

MEMBRANES

PLANTS

TERMS:

heat
temperature
stress
drought . . .

tonoplast
plasma membrane
thylakoid
membrane . . .

tomato
Lycopersicon
Lycopersicum

Step 3: Form Concept Groups:

Expressing the concept groups verbally:

Stress

heat or temperature or stress or drought...

Membrane

tonoplast or plasma membrane or thylakoid or membrane

Plant

tomato or lycopersicon

Expressing the concepts pictorially: hort1

Step 4: Combine Concept Groups.

Expressing the combination verbally:

(heat or temperature or stress or drought)
AND
(tonoplast or plasma membrane or thylakoid or membrane)
AND
(tomato or Lycopersicon)

Expressing the combination pictorially: hort2

Step 5a: Select the appropriate database(s) on THOR, the Purdue Library website.

Note: to learn more about these dbases, see "Selected Electronic Journal Indexes Agriculture and logy" and "Quick Reference Guide to Online Bi Resources at Purdue", available in the Life Sciences Library and on the Web at: http://www.lib.purdue.edu/life/

Step 5b: Or, select the appropriate database(s) in a library (CD-ROM access).

Library

CD-ROM Resource

Type of Interface

Life Science

Agricola, 1970-1978
PestBank

WinSPIRS
WinSPIRS

Engineering

Earth Info (hydrologic data) U.S. Patent databases

Other
Other

Step 5c: Or, search the internet via an internet search engine or site.

Web Resource

Web Address

Altavista

http://www.altavista.com

AllTheWeb

http://www.alltheweb.com/

Hotbot

http://www.hotbot.com

Yahoo

http://www.yahoo.com/

Grants awarded by NSF, USDA.

http://fundedresearch.cos.com

PlantFacts [extension bulletins, USA]

http://plantfacts.ohio-state.edu/

 

Step 6: Perform the search. Use the correct truncation symbols and rules for combining Concept Groups required by the searching - software.

Search Engine

Truncation Symbol

  • Purdue Online Catalog, ProQuest Research Library

?

  • FirstSearch Databases (plurals, only) [WorldCat]

+

  • OVID Databases [Agricola, Current Contents, Compendex, ERIC, Medline]

$

  • WebSPIRS [CAB Abstracts, Biological Abstracts, FSTA]
  • AltaVista
  • Web of Science [Science Citation Index]
  • CSA (Cambridge Scientific Abstracts) [Environmental Sciences & Pollution Management]
  • WilsonWeb [Biological & Agricultural Index, Applied Science & Technology Abstracts]

*

Step 7: Evaluate the search results.

Step 8: Revise the concepts or terms, and re-do the search.

[BACK TO THE TOP]


2. Performing the Search

Reminder: As an example, the "need" we're searching in these sample searches is to find information about research done on the effect of environmental stress on tomato membranes.

The vocabulary we've decided to start our search with is: (heat or temperature or stress or drought) AND (tonoplast or plasma membrane or thylakoid or membrane) AND (tomato or Lycopersicon)


Afont size="+1">Performing the Search in the Pe Libraries Catalog

Use the "Catalog" when you are looking for a book about a particular subject. Also use the "Catalog" if you know the name of a journal and are trying to determine which Purdue library has the journal. Note: Use the "Indexes" if you are trying to find if a journal article has been written about a topic.

Finding a book on a particular topic:

URL:http://www.lib.purdue.edu
Click on "Catalogs"
Click on "West Lafayette"
Click on "Keyword Search"

1. Type each concept group as a "keyword" search, to get a feel for the depth of the database.

2. Combine concept groups, using AND.

3. Evaluate the search:

4. Edit your search, if needed!

Click on the "New Search" button to return to your search screen, and revise the search.
DO NOT USE YOUR "BACK" BUTTON WHILE IN THE CATALOG!! IT MAY CAUSE ERRORS! Rather, use the internal navigational buttons: "New Search"; "Titles; "Headings".

5. Other features of the Catalog:

[BACK TO THE TOP]


B. Performing the Search inCurrent Contents:
An example of using the OVIDWeb search software.

Selected other databases available via OVIDWeb include:
Agricola, Compendex, Medline, ERIC, PsychInfo.

Connect to the Indexes:

URL: http://www.lib.purdue.edu
Click on "Indexes"
Then click on the "WWW" link for Current Contents

1. Type each concept group as an individual search. Use OR between terms:

Search Number

Type:

# HITS

1

heat or temperature or stress or drought

101682

2

tonoplast or plasma membrane$ or thylakoid$ or membran$

34864

3

tomato$ or lycopersicon

1590

2. Combine concept groups, using AND:

Note: The "number" refers to the set number of the search. In this example, "heat or temperature or stress or drought" was the first set (set number one) typed. This method of combining is simpler than using the combine button, and will allow for the development of more complex search statements.

Type:

# HITS

1 and 2 and 3 (to combine set 1 and 2 and 3)

30

3. Displaying & Evaluating the results.

4. Print the results.

5. E-mail the results.

Same instructions as "To Print", above. Except, press "Email" instead of "Display".
Then type in your email address.

6. Download the results to your hard drive.

Same instructions as "To Print", above. Except, press "Download" instead of "Display".
Select the location to save the file, and give it a name.

7. Save search strategy to be re-run at a later date.

Note: you may save as many searches as desired. For example, create one with just authors you want to keep track of! Create others for your research interests. And others for your teaching interests.

To save a search:
When on the screen where queries are entered (the "Main Search Page")...

Note: Do not run a search created in one database in another database. Sometimes it will work ok, but more often it will not because of unique "fields" within the various databases.

8. Create an AutoAlert request.

AutoAlerts (termed SDIs - Selective Dissemination of Information - by OVID) cause your search to be run automatically against the database whenever the database is updated (weekly, monthly or quarterly), generating an email message that contains new citations that match your search.

9. Some other options with OVID software:

[BACK TO THE TOP]


C. Performing the Search in CAB Abstracts:
an example of using the SilverPlats WebSPIRS Interface

Selected other databases available via the WebSPIRS interface include:
Biological Abstracts & Biological Abstracts RRM, GeoRef, and FSTA.

Connect to the Indexes:

URL: http://www.lib.purdue.edu
Click on "Indexes"
Click on the "WWW" link for CAB Abstracts

WebSPIRS databases are available to Purdue University students, faculty and staff. Those logging in from a computer outside of the "purdue.edu" domain (e.g., at home or while on sabbatical) must use the proxy server to obtain access. For simple instructions on modifying Netscape or Internet Explorer so they will use the proxy server, see http://www.lib.purdue.edu/proxy/.

1. Type each concept group as an individual search. Use OR between terms. Search using "Words Anywhere" or "Subject."

Type:

# HITS

heat or temperature or stress or drought

221694

tonoplast or plasma membrane* or thylakoid* or membran*

54814

tomato* or lycopersicon

40303

2. Combine Concept Groups, using AND

Note: The "number" refers to the set number of the search; notice that you have to use the pound sign (#) in front of the number. In this example, "heat or temperature or stress or drought" was the first set (set number one) typed. For simple "and" combinations, you can click on the checkbox next to the set number; then click on the "combine checked" button.

Type:

#HITS

#1 and #2 and #3 (to combine set #1 and #2 and #3)
(or, you can check the box next to each set, select "and" and click on "combine checked".)

137

3. Viewing and reviewing the results.

4. Print the results

5. E-mail the results.

Same instructions as "To Print", above. Just press "Email" instead of "Print".
Then type in your email address.

6. Download the results to your hard drive.

7. Save your search strategy(s), to be re-run another time.

8. Create an Auto-Alert (SDI = Selective Dissemination of Information)

This will cause a search of your choice to be run everytime the database is updated, with the new results sent to you via email. Most WebSPIRS databases are updated 4x per year.

9. Some other options with the SilverPlatter WebSPIRS search engine:>

[BACK TO THE TOP]


D. Performing the Search in Web of Science

Web of Science provides access to three indexes: Science Citation Index, the Social Sciences Citation Index, and the Arts & Humanities Citation Index, 1977 - present. Abstracts are available for many articles.

Connect to the Web of Science:

URL: http://www.lib.purdue.edu
Click on "Indexes" and select "Web of Science"

There are two primary search modes in Web of Science:

1. GENERAL SEARCH

To get started on a General Search:

1. Type the whole piearch on one line, using proper parentheses, truncation and Boolean search terms:

2. Select (mark) records of interest. After selecting records of interest on a summary page, press the "submit" button, before proceeding to the next page of ten records.

Note: 10 records are displayed per screen. The "markall" button selects the 10 records on the current screen; to select ALL the records, you must visit every screen; be sure to click on "submit" before moving to the next screen.

3. To print, email or save records.

Note: It is recommended that you wait to print, etc., un've completed all the searches you wish perform to during a Web of Science session, i.e., right before you're ready to log off. This way, any duplicate records from similar searches will be removed. If you do wish to continue searching after you've printed results, and you will want to clear the marked records buffer. To do this, return to the Web of Science "home", and click on "New Session".

After selecting and submitting all the desired records:

4. Special features available when viewing the individual record for an article. All of these features are designed to lead you to articles that are, in some way, related to the current article.

2. CITED RSEARCH

Use the Cited Reference Search to locate articles published since 1977 that can author or article. The cited article may be of any age; but the articles citing it will be no older than 1977. One usually uses the Cited Reference Search to search via the author of an article. The Cited Reference Search is also useful when trying to verify a citation, as many references at the end of papers have been cited incorrectly!

[BACK TO THE TOP]


3. Determining whether Purdue has the journal of interest.

You can easily determine whether Purdue has a subscription to a joury opening another browser window at the same time that you are searching an Index, and searching the Catalog in the new window. Then you can switch back and forth between your Index window and the Catalog window. You will need to visit each window frequently, as all databases in the Purdue Libraries system are set to time-out after about 10 minutes of inactivity.

If you find that Purdue does not have a subscription to a journal from which you need an article, you may request the article via the online Document Delivery form; please allow at least two weeks for delivery.

To open another browser window (in Netscape, v. 4x), and search the Catalog for journal holdings information:

New Feature in the OVID and WebSPIRS Indexes: Direct Link to Purdue Holdings

In the past, when you were looking for journal articles, it was a two-step process: first you'd use an subject-specific index to locate articles of interest, and then you'd have to go into the Catalog, and type in the title of the journal with the article of interest to determine if one of the Purdue Libraries had a subscription to the journal.

This process recently got markedly easier! For all of the databases which aringcessed via t or WebSPIRS search engines, there is now a web link in every Index record which links directly to the record for the journal in the Purdue Catalog. Just click on the link in the index, and another web window will open up, displaying the Catalog record for the journal. Scroll down the Catalog record, and you can easily ascertain whether Purdue subscribes to the journal, and which library has the issue of interest. After you've ascertained whether we have the journal, you can go back to the window with the Index's search results. Pop back and forth between the Index window and the Catalog window, as needed!

In OVID databases, the link is located at the top of the record, and is labeled "Query for Holdings at... Purdue-West Lafayette". OVID databases include Agricola, Compendex, Current Contents, Medline, PsychInfo, and others.

In WebSPIRS databases, the link is located at the bottom of each record, and is labeled "Check for Holdings". WebSPIRS databases include Biological Abstracts, CAB Abstracts, FSTA, and others.

[BACK TO THE TOP]

Last update: April 3, 2008

Prepared by: Monica Kirkwood (monicacu@purdue.edu)